Workshop Topics
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filed under:
workshop
A short summary of the topics to be covered in the Bioinformatics Workshop.
The Bioinformatics of Entangled Genomes Workshop will cover multiple topics regarding genomic analyses. We have several topics and dates finalized now.
| Monday | · Getting around in Linux/Unix | Krishnakumar |
| Monday | · File formats (FASTA/FASTQ, GFF/BED, SAM/BAM) | Krishnakumar |
| Monday | · iPlant Discovery Environment | Hoyt |
| Monday | · iPlant · Atmosphere: An Open Science Cloud | Hoyt |
| Monday | · OSU Cowboy | Brunson |
| Monday | · Genome Browsing and Visualization | Krishnakumar |
| Tuesday | · RNA-Seq transcript assembly (de-novo and genome guided) | Krishnakumar |
| Tuesday | · Genome assembly | H. Tang |
| Tuesday | · Metagenomics with MEGAN | Hoyt |
| Wednesday | · Genome mapping | H. Tang |
| Wednesday | · Comparative Genomics | Eric Lyons - CoGe |
| Thursday | - Annotation General | Orvis (TBD) |
| Thursday | - Annotation (Trinotate) | Couger (TBD) |
| Thursday | · Metagenomic analyses (microbiome) | Orvis (TBD) |
| Friday | - Long-read-NGS data, combining short-read+long | Hoyt |
| Friday | · Student presentations on assembly and metagenomics | Class |
